Journal Articles
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Saracoglu, A; Ozen, H; Apaydin, MS; Maltas, A A New Approach to Determine Traffic Peak Periods to Utilize in Transportation Planning Journal Article Arabian Journal for Science and Engineering, pp. 1–10, 2021. BibTeX @article{pop00001q,
title = {A New Approach to Determine Traffic Peak Periods to Utilize in Transportation Planning},
author = {A Saracoglu and H Ozen and MS Apaydin and A Maltas},
year = {2021},
date = {2021-01-01},
journal = {Arabian Journal for Science and Engineering},
pages = {1--10},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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TUNCER, I; KESKİN, Ş; APAYDIN, MS İşin Olsun Platformu İlanlarında İçerik Kontrolü Journal Article Gazi Mühendislik Bilimleri Dergisi, 7 (3), pp. 243–252, 2021. BibTeX @article{pop00002s,
title = {İşin Olsun Platformu İlanlarında İçerik Kontrolü},
author = {I TUNCER and Ş KESKİN and MS APAYDIN},
year = {2021},
date = {2021-01-01},
journal = {Gazi Mühendislik Bilimleri Dergisi},
volume = {7},
number = {3},
pages = {243--252},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Ciftci, B; Apaydin, MS A deep learning approach to sentiment analysis in Turkish Journal Article 2018 International Conference on Artificial Intelligence and Data Processing …, 2018. BibTeX @article{pop00002l,
title = {A deep learning approach to sentiment analysis in Turkish},
author = {B Ciftci and MS Apaydin},
year = {2018},
date = {2018-01-01},
journal = {2018 International Conference on Artificial Intelligence and Data Processing …},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Çakmak, UC; Çatay, B; Apaydin, MS A neural network approach for predicting speeds on road networks Journal Article 2018 26th Signal Processing and Communications Applications Conference (SIU …, 2018. BibTeX @article{pop00003p,
title = {A neural network approach for predicting speeds on road networks},
author = {UC Çakmak and B Çatay and MS Apaydin},
year = {2018},
date = {2018-01-01},
journal = {2018 26th Signal Processing and Communications Applications Conference (SIU …},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Çakmak, UC; Apaydın, MS; Çatay, B Traffic speed prediction with neural networks Journal Article Operations Research Proceedings, 2017 , pp. 737–743, 2018. BibTeX @article{pop00004m,
title = {Traffic speed prediction with neural networks},
author = {UC Çakmak and MS Apaydın and B Çatay},
year = {2018},
date = {2018-01-01},
journal = {Operations Research Proceedings},
volume = {2017},
pages = {737--743},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Cetinkaya, S; Ekren, SN; Apaydin, MS PROGRESS IN NUCLEAR VECTOR REPLACEMENT FOR NMR PROTEIN STRUCTURE-BASED ASSIGNMENTS Journal Article RAIRO-OPERATIONS RESEARCH, 50 (2), pp. 341–349, 2016. BibTeX @article{pop00005m,
title = {PROGRESS IN NUCLEAR VECTOR REPLACEMENT FOR NMR PROTEIN STRUCTURE-BASED ASSIGNMENTS},
author = {S Cetinkaya and SN Ekren and MS Apaydin},
year = {2016},
date = {2016-01-01},
journal = {RAIRO-OPERATIONS RESEARCH},
volume = {50},
number = {2},
pages = {341--349},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Akhmedov, M; Çatay, B; Apaydın, MS Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments Journal Article Journal of Bioinformatics and Computational Biology, 13 (6), pp. 1550020–1550020, 2015. BibTeX @article{pop00006m,
title = {Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments},
author = {M Akhmedov and B Çatay and MS Apaydın},
year = {2015},
date = {2015-01-01},
journal = {Journal of Bioinformatics and Computational Biology},
volume = {13},
number = {6},
pages = {1550020--1550020},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Ekren, ŞN; Apaydın, MS Incorporating triple resonance experiment data into NVR for NMR protein structure-based assignments Journal Article 2014 22nd Signal Processing and Communications Applications Conference (SIU …, 2014. BibTeX @article{pop00007j,
title = {Incorporating triple resonance experiment data into NVR for NMR protein structure-based assignments},
author = {ŞN Ekren and MS Apaydın},
year = {2014},
date = {2014-01-01},
journal = {2014 22nd Signal Processing and Communications Applications Conference (SIU …},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Aslanov, J; Çatay, B; Apaydin, MS An ant colony optimization approach for solving the nuclear magnetic resonance structure based assignment problem Journal Article Proceedings of the 15th annual conference companion on Genetic and …, 2013. BibTeX @article{pop00008l,
title = {An ant colony optimization approach for solving the nuclear magnetic resonance structure based assignment problem},
author = {J Aslanov and B Çatay and MS Apaydin},
year = {2013},
date = {2013-01-01},
journal = {Proceedings of the 15th annual conference companion on Genetic and …},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Akhmedov, M; Çatay, B; Apaydın, MS Distinguishing the type of NOE for NMR protein structure-based assignments Journal Article 2013 21st Signal Processing and Communications Applications Conference (SIU …, 2013. BibTeX @article{pop00009j,
title = {Distinguishing the type of NOE for NMR protein structure-based assignments},
author = {M Akhmedov and B Çatay and MS Apaydın},
year = {2013},
date = {2013-01-01},
journal = {2013 21st Signal Processing and Communications Applications Conference (SIU …},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Çavuşlar, G; Çatay, B; Apaydın, MS A tabu search approach for the NMR protein structure-based assignment problem Journal Article IEEE/ACM transactions on computational biology and bioinformatics 9 (6 …, 2012. BibTeX @article{pop00010l,
title = {A tabu search approach for the NMR protein structure-based assignment problem},
author = {G Çavuşlar and B Çatay and MS Apaydın},
year = {2012},
date = {2012-01-01},
journal = {IEEE/ACM transactions on computational biology and bioinformatics 9 (6 …},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Erdogan, H; Apaydin, MS Incorporating amino acid typing into nuclear magnetic resonance protein structure-based assignments Journal Article Proteom. Bioinform, 5 , pp. 116–121, 2012. BibTeX @article{pop00011i,
title = {Incorporating amino acid typing into nuclear magnetic resonance protein structure-based assignments},
author = {H Erdogan and MS Apaydin},
year = {2012},
date = {2012-01-01},
journal = {Proteom. Bioinform},
volume = {5},
pages = {116--121},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Apaydin, MS; Çatay, B; Patrick, N; Donald, BR NVR-BIP: nuclear vector replacement using binary integer programming for NMR structure-based assignments Journal Article The Computer Journal, 54 (5), pp. 708–716, 2011. BibTeX @article{pop00012g,
title = {NVR-BIP: nuclear vector replacement using binary integer programming for NMR structure-based assignments},
author = {MS Apaydin and B Çatay and N Patrick and BR Donald},
year = {2011},
date = {2011-01-01},
journal = {The Computer Journal},
volume = {54},
number = {5},
pages = {708--716},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Çalpur, MÇ; Erdoğan, H; Catay, B; Donald, BR; Apaydin, MS Developing a scoring function for NMR structure-based assignments using machine learning Journal Article Computer and Information Sciences, pp. 87–90, 2011. BibTeX @article{pop00013i,
title = {Developing a scoring function for NMR structure-based assignments using machine learning},
author = {MÇ Çalpur and H Erdoğan and B Catay and BR Donald and MS Apaydin},
year = {2011},
date = {2011-01-01},
journal = {Computer and Information Sciences},
pages = {87--90},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Erdoğan, H; Apaydin, MS Using amino acid typing to improve the accuracy of NMR structure based assignments Journal Article 2010 5th International Symposium on Health Informatics and Bioinformatics …, 2010. BibTeX @article{pop00014i,
title = {Using amino acid typing to improve the accuracy of NMR structure based assignments},
author = {H Erdoğan and MS Apaydin},
year = {2010},
date = {2010-01-01},
journal = {2010 5th International Symposium on Health Informatics and Bioinformatics …},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Apaydın, MS; Conitzer, V; Donald, BR Structure-based protein NMR assignments using native structural ensembles Journal Article Journal of Biomolecular NMR, 40 (4), pp. 263–276, 2008. BibTeX @article{pop00015i,
title = {Structure-based protein NMR assignments using native structural ensembles},
author = {MS Apaydın and V Conitzer and BR Donald},
year = {2008},
date = {2008-01-01},
journal = {Journal of Biomolecular NMR},
volume = {40},
number = {4},
pages = {263--276},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Chiang, TH; Apaydin, MS; Brutlag, DL; Hsu, D; Latombe, JC Using stochastic roadmap simulation to predict experimental quantities in protein folding kinetics: folding rates and phi-values Journal Article Journal of Computational Biology, 14 (5), pp. 578–593, 2007. BibTeX @article{pop00016f,
title = {Using stochastic roadmap simulation to predict experimental quantities in protein folding kinetics: folding rates and phi-values},
author = {TH Chiang and MS Apaydin and DL Brutlag and D Hsu and JC Latombe},
year = {2007},
date = {2007-01-01},
journal = {Journal of Computational Biology},
volume = {14},
number = {5},
pages = {578--593},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Chiang, TH; Apaydin, MS; Brutlag, DL; Hsu, D; Latombe, JC Predicting experimental quantities in protein folding kinetics using stochastic roadmap simulation Journal Article Annual International Conference on Research in Computational Molecular …, 2006. BibTeX @article{pop00017g,
title = {Predicting experimental quantities in protein folding kinetics using stochastic roadmap simulation},
author = {TH Chiang and MS Apaydin and DL Brutlag and D Hsu and JC Latombe},
year = {2006},
date = {2006-01-01},
journal = {Annual International Conference on Research in Computational Molecular …},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Apaydın, MS; Brutlag, DL; Guestrin, C; Hsu, D; Latombe, JC Stochastic conformational roadmaps for computing ensemble properties of molecular motion Journal Article Algorithmic Foundations of Robotics V, pp. 131–147, 2004. BibTeX @article{pop00018i,
title = {Stochastic conformational roadmaps for computing ensemble properties of molecular motion},
author = {MS Apaydın and DL Brutlag and C Guestrin and D Hsu and JC Latombe},
year = {2004},
date = {2004-01-01},
journal = {Algorithmic Foundations of Robotics V},
pages = {131--147},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Apaydin, MS; Brutlag, DL; Guestrin, C; Hsu, D; Latombe, JC; Varma, C Stochastic roadmap simulation: An efficient representation and algorithm for analyzing molecular motion Journal Article Journal of Computational Biology 10 (3-4), pp. 257–281, 2003. BibTeX @article{pop00019k,
title = {Stochastic roadmap simulation: An efficient representation and algorithm for analyzing molecular motion},
author = {MS Apaydin and DL Brutlag and C Guestrin and D Hsu and JC Latombe and C Varma},
year = {2003},
date = {2003-01-01},
journal = {Journal of Computational Biology 10 (3-4)},
pages = {257--281},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Apaydın, MS; Guestrin, CE; Varma, C; Brutlag, DL; Latombe, JC Stochastic roadmap simulation for the study of ligand-protein interactions Journal Article Bioinformatics 18 (suppl_2), S18-S, 26 , 2002. BibTeX @article{pop00020i,
title = {Stochastic roadmap simulation for the study of ligand-protein interactions},
author = {MS Apaydın and CE Guestrin and C Varma and DL Brutlag and JC Latombe},
year = {2002},
date = {2002-01-01},
journal = {Bioinformatics 18 (suppl_2), S18-S},
volume = {26},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Apaydin, M; Guestrin, C; Varma, C; Brutlag, D; Latombe, J Studying protein-ligand interactions with stochastic roadmap simulation Journal Article Bioinformatics, 18 (2), pp. 18–26, 2002. BibTeX @article{pop00021h,
title = {Studying protein-ligand interactions with stochastic roadmap simulation},
author = {M Apaydin and C Guestrin and C Varma and D Brutlag and J Latombe},
year = {2002},
date = {2002-01-01},
journal = {Bioinformatics},
volume = {18},
number = {2},
pages = {18--26},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Apaydin, MS; Singh, AP; Brutlag, DL; Latombe, JC Capturing molecular energy landscapes with probabilistic conformational roadmaps Journal Article Proceedings 2001 ICRA. IEEE International Conference on Robotics and …, 2001. BibTeX @article{pop00022g,
title = {Capturing molecular energy landscapes with probabilistic conformational roadmaps},
author = {MS Apaydin and AP Singh and DL Brutlag and JC Latombe},
year = {2001},
date = {2001-01-01},
journal = {Proceedings 2001 ICRA. IEEE International Conference on Robotics and …},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Beigel, R; Alon, N; Kasif, S; Apaydin, MS; Fortnow, L An optimal procedure for gap closing in whole genome shotgun sequencing Journal Article Proceedings of the fifth annual international conference on Computational …, 2001. BibTeX @article{pop00023h,
title = {An optimal procedure for gap closing in whole genome shotgun sequencing},
author = {R Beigel and N Alon and S Kasif and MS Apaydin and L Fortnow},
year = {2001},
date = {2001-01-01},
journal = {Proceedings of the fifth annual international conference on Computational …},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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