Publications of Mehmet Serkan Apaydın

Journal Articles

Saracoglu, A; Ozen, H; Apaydin, MS; Maltas, A

A New Approach to Determine Traffic Peak Periods to Utilize in Transportation Planning Journal Article

Arabian Journal for Science and Engineering, pp. 1–10, 2021.

BibTeX

TUNCER, I; KESKİN, Ş; APAYDIN, MS

İşin Olsun Platformu İlanlarında İçerik Kontrolü Journal Article

Gazi Mühendislik Bilimleri Dergisi, 7 (3), pp. 243–252, 2021.

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Ciftci, B; Apaydin, MS

A deep learning approach to sentiment analysis in Turkish Journal Article

2018 International Conference on Artificial Intelligence and Data Processing …, 2018.

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Çakmak, UC; Çatay, B; Apaydin, MS

A neural network approach for predicting speeds on road networks Journal Article

2018 26th Signal Processing and Communications Applications Conference (SIU …, 2018.

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Çakmak, UC; Apaydın, MS; Çatay, B

Traffic speed prediction with neural networks Journal Article

Operations Research Proceedings, 2017 , pp. 737–743, 2018.

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Cetinkaya, S; Ekren, SN; Apaydin, MS

PROGRESS IN NUCLEAR VECTOR REPLACEMENT FOR NMR PROTEIN STRUCTURE-BASED ASSIGNMENTS Journal Article

RAIRO-OPERATIONS RESEARCH, 50 (2), pp. 341–349, 2016.

BibTeX

Akhmedov, M; Çatay, B; Apaydın, MS

Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments Journal Article

Journal of Bioinformatics and Computational Biology, 13 (6), pp. 1550020–1550020, 2015.

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Ekren, ŞN; Apaydın, MS

Incorporating triple resonance experiment data into NVR for NMR protein structure-based assignments Journal Article

2014 22nd Signal Processing and Communications Applications Conference (SIU …, 2014.

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Aslanov, J; Çatay, B; Apaydin, MS

An ant colony optimization approach for solving the nuclear magnetic resonance structure based assignment problem Journal Article

Proceedings of the 15th annual conference companion on Genetic and …, 2013.

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Akhmedov, M; Çatay, B; Apaydın, MS

Distinguishing the type of NOE for NMR protein structure-based assignments Journal Article

2013 21st Signal Processing and Communications Applications Conference (SIU …, 2013.

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Çavuşlar, G; Çatay, B; Apaydın, MS

A tabu search approach for the NMR protein structure-based assignment problem Journal Article

IEEE/ACM transactions on computational biology and bioinformatics 9 (6 …, 2012.

BibTeX

Erdogan, H; Apaydin, MS

Incorporating amino acid typing into nuclear magnetic resonance protein structure-based assignments Journal Article

Proteom. Bioinform, 5 , pp. 116–121, 2012.

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Apaydin, MS; Çatay, B; Patrick, N; Donald, BR

NVR-BIP: nuclear vector replacement using binary integer programming for NMR structure-based assignments Journal Article

The Computer Journal, 54 (5), pp. 708–716, 2011.

BibTeX

Çalpur, MÇ; Erdoğan, H; Catay, B; Donald, BR; Apaydin, MS

Developing a scoring function for NMR structure-based assignments using machine learning Journal Article

Computer and Information Sciences, pp. 87–90, 2011.

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Erdoğan, H; Apaydin, MS

Using amino acid typing to improve the accuracy of NMR structure based assignments Journal Article

2010 5th International Symposium on Health Informatics and Bioinformatics …, 2010.

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Apaydın, MS; Conitzer, V; Donald, BR

Structure-based protein NMR assignments using native structural ensembles Journal Article

Journal of Biomolecular NMR, 40 (4), pp. 263–276, 2008.

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Chiang, TH; Apaydin, MS; Brutlag, DL; Hsu, D; Latombe, JC

Using stochastic roadmap simulation to predict experimental quantities in protein folding kinetics: folding rates and phi-values Journal Article

Journal of Computational Biology, 14 (5), pp. 578–593, 2007.

BibTeX

Chiang, TH; Apaydin, MS; Brutlag, DL; Hsu, D; Latombe, JC

Predicting experimental quantities in protein folding kinetics using stochastic roadmap simulation Journal Article

Annual International Conference on Research in Computational Molecular …, 2006.

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Apaydın, MS; Brutlag, DL; Guestrin, C; Hsu, D; Latombe, JC

Stochastic conformational roadmaps for computing ensemble properties of molecular motion Journal Article

Algorithmic Foundations of Robotics V, pp. 131–147, 2004.

BibTeX

Apaydin, MS; Brutlag, DL; Guestrin, C; Hsu, D; Latombe, JC; Varma, C

Stochastic roadmap simulation: An efficient representation and algorithm for analyzing molecular motion Journal Article

Journal of Computational Biology 10 (3-4), pp. 257–281, 2003.

BibTeX

Apaydın, MS; Guestrin, CE; Varma, C; Brutlag, DL; Latombe, JC

Stochastic roadmap simulation for the study of ligand-protein interactions Journal Article

Bioinformatics 18 (suppl_2), S18-S, 26 , 2002.

BibTeX

Apaydin, M; Guestrin, C; Varma, C; Brutlag, D; Latombe, J

Studying protein-ligand interactions with stochastic roadmap simulation Journal Article

Bioinformatics, 18 (2), pp. 18–26, 2002.

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Apaydin, MS; Singh, AP; Brutlag, DL; Latombe, JC

Capturing molecular energy landscapes with probabilistic conformational roadmaps Journal Article

Proceedings 2001 ICRA. IEEE International Conference on Robotics and …, 2001.

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Beigel, R; Alon, N; Kasif, S; Apaydin, MS; Fortnow, L

An optimal procedure for gap closing in whole genome shotgun sequencing Journal Article

Proceedings of the fifth annual international conference on Computational …, 2001.

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